cluster:73
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| cluster:73 [2023/11/10 20:32] – [Paleogenomics Tools] hmeij07 | cluster:73 [2026/08/07 13:43] (current) – [SAS] hmeij07 | ||
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| Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
| + | |||
| + | |||
| + | ====== Julia ====== | ||
| + | |||
| + | * https:// | ||
| + | * / | ||
| + | * link in / | ||
| + | * runs on centos7 and rocky8 | ||
| Line 77: | Line 85: | ||
| </ | </ | ||
| - | * **mdtraj** | + | * **mdtraj, matplotlib, pandas** |
| < | < | ||
| Line 91: | Line 99: | ||
| </ | </ | ||
| + | |||
| + | * ** seaborn** | ||
| + | * https:// | ||
| + | * also in miniconda3/ | ||
| + | |||
| + | < | ||
| + | |||
| + | patsy conda-forge/ | ||
| + | seaborn | ||
| + | seaborn-base | ||
| + | statsmodels | ||
| + | |||
| + | </ | ||
| + | |||
| + | * joblib (thayerlab) | ||
| + | |||
| + | < | ||
| + | |||
| + | joblib | ||
| + | |||
| + | </ | ||
| + | |||
| + | |||
| ====== Masurca ====== | ====== Masurca ====== | ||
| Line 1506: | Line 1537: | ||
| # drop all the packages in from previous versions | # drop all the packages in from previous versions | ||
| https:// | https:// | ||
| + | |||
| + | |||
| + | export PATH=/ | ||
| + | export LD_LIBRARY_PATH=/ | ||
| + | which pip3 python3 | ||
| + | |||
| + | / | ||
| + | / | ||
| </ | </ | ||
| Line 2393: | Line 2432: | ||
| [[https:// | [[https:// | ||
| - | * program v13,2.1 installed | + | Requires CentOS8 now ... |
| - | * program | + | * program: mcc, math, mathematica in / |
| - | * program: mcc, math, mathematica (v 12.2) | ||
| - | * install dir: / | ||
| - | * docs: on the web | ||
| - | * www: http:// | ||
| - | * Centos7, use queues mwgpu, amber128 or exx96 | ||
| - | * For GUI launch on greentail52 | ||
| * Parallel kernels | * Parallel kernels | ||
| Line 2457: | Line 2490: | ||
| ====== SAS ====== | ====== SAS ====== | ||
| - | SAS (v9.2 64 bits) is now available on the compute clusters. | + | SAS not installed as of summer 2023 |
| - | + | ||
| - | http:// | + | |
| The QAC has well trained tutors in SAS, for more info http:// | The QAC has well trained tutors in SAS, for more info http:// | ||
| Line 2593: | Line 2624: | ||
| ====== LAMMPS CPU/GPU ====== | ====== LAMMPS CPU/GPU ====== | ||
| + | |||
| + | ** 7Feb2024 ** | ||
| + | |||
| + | |||
| + | * / | ||
| + | * lmp_serial and lmp_mpi | ||
| + | * 3 cuda versions with 3 different precision settings | ||
| + | * compiled against cuda 10.2 on exx96, may work in mwgpu cuda-11.2 | ||
| + | * notes: / | ||
| + | * does **not** support openmp, look for the OpenHPC version for that | ||
| ** 25Apr2023** | ** 25Apr2023** | ||
| Line 4494: | Line 4535: | ||
| ====== Matlab ====== | ====== Matlab ====== | ||
| - | * installed R2023a | + | Requires CentOS 8 now ... |
| - | * installed R2022a | + | * program: Matlab, link to binary is ' |
| - | * installed R2021a | ||
| - | |||
| - | * program: Matlab, link to binary is ' | ||
| - | * R2020b, campus wide license so no more restrictions on licenses | ||
| - | * No Distributed Computing Engine or Matlab Parallel (for now) | ||
| - | * install dir: / | ||
| - | * docs & www: http:// | ||
| - | * CentOS7 required use on queues mwgpu, amber128 and exx96 | ||
| - | * For GUI launch on greentail52 | ||
| Note: | Note: | ||
| Line 4519: | Line 4551: | ||
| ====== Stata ====== | ====== Stata ====== | ||
| - | * program stata[-mp|-se] in your $PATH, version 18 | + | * program stata[-mp|-se] in your $PATH (share/ |
| - | * v17 will still run so add ' | + | * 6-user |
| - | * so that makes for 12 licenses 8-) | + | |
| - | + | ||
| - | * program: Stata v 17, 6-user | + | |
| * install dir: / | * install dir: / | ||
| * docs: at web site | * docs: at web site | ||
cluster/73.1699648345.txt.gz · Last modified: by hmeij07