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cluster:106 [2012/07/10 10:51]
hmeij created
cluster:106 [2016/11/21 15:22] (current)
hmeij07 [Sample]
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 ==== Sample ==== ==== Sample ====
  
-* save in a script ​abnd submit to scheduler+* save in a script ​say called ''​run''​ and submit to scheduler ​''​bsub < run''​
  
 <​code>​ <​code>​
- 
 #!/bin/bash #!/bin/bash
  
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 # find queues: bqueues ​ # find queues: bqueues ​
 # submit job: bsub < run # submit job: bsub < run
-# jobs submmitted: bjobs+show jobs submitted: bjobs
  
 #BSUB -q stata #BSUB -q stata
-#BSUB -R "​span[hosts=1]"​ 
 #BSUB -J test #BSUB -J test
 #BSUB -o out #BSUB -o out
 #BSUB -e err #BSUB -e err
  
-# use all cores per node +# use cores (job slots) ... a license limitation of 6 
-note the span forces ​all on one node or use the -x flag +#BSUB -n 6 
-#BSUB -n 8 +# force using all on one node (hosts=1) ​ 
-# can stata-mp work across nodes? +#BSUB -R "​span[hosts=1]"​ 
-if so, raise the hosts=value or control  + 
-# process per node with span=value ​+# can stata-mp work across nodes?  
 +it appears not 
  
 # scratch dirs # scratch dirs
 MYSANSCRATCH=/​sanscratch/​$LSB_JOBID MYSANSCRATCH=/​sanscratch/​$LSB_JOBID
 MYLOCALSCRATCH=/​localscratch/​$LSB_JOBID MYLOCALSCRATCH=/​localscratch/​$LSB_JOBID
-export PATH+ 
 +# required in 12 
 +export ​PATH=/​share/​apps/​stata/​12:​$PATH
  
 # alternate workdir, stage data and/or retrieve results # alternate workdir, stage data and/or retrieve results
 # cd $MYSANSCRATCH # cd $MYSANSCRATCH
-# cp ~/​stata/​AllRegions2.dta ​ ~/​stata/​nikkei1.dta .+# cp ~/​stata/​AllRegions2.dta ​ ~/​stata/​nikkei1.dta ​ .
 # /​share/​apps/​stata/​10/​stata-mp -b do wagepan80_87 # /​share/​apps/​stata/​10/​stata-mp -b do wagepan80_87
-# assumes output is written back to home, else copy back+# assumes output is written back to home, else copy results to ~/stata/
  
 # working in home dir # working in home dir
-/​share/​apps/​stata/​10/stata-mp -b do firm_analysis_cluster+cd ~/stata/ 
 +/​share/​apps/​stata/​12/stata-mp -b do firm_analysis_cluster
  
  
cluster/106.1341931913.txt.gz · Last modified: 2012/07/10 10:51 by hmeij