cluster:124
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cluster:124 [2013/10/31 14:53] hmeij |
cluster:124 [2016/03/03 13:58] hmeij07 |
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| \\ | \\ | ||
| **[[cluster: | **[[cluster: | ||
| + | |||
| + | Queue '' | ||
| + | --- // | ||
| + | |||
| + | Adjust your PATH and LD_LIBRARY_PATH accordingly. | ||
| ==== BLCR ==== | ==== BLCR ==== | ||
| Line 142: | Line 147: | ||
| * The restart job may end up on another node but will same process_id | * The restart job may end up on another node but will same process_id | ||
| - | After you have restarted, you can observe the tool starting from the checkpoint file you are pointing to. To simulate a crash, while your first submission is running with '' | + | After you have restarted, you can observe the tool starting from the checkpoint file you are pointing to. To simulate a crash, while your first submission is running with '' |
| It would be ever sweeter if the scheduler could be told to do all the checkpointing at intervals. | It would be ever sweeter if the scheduler could be told to do all the checkpointing at intervals. | ||
| Line 163: | Line 168: | ||
| export LD_LIBRARY_PATH=/ | export LD_LIBRARY_PATH=/ | ||
| - | # checkpoint | + | # checkpoint |
| MYSANSCRATCH=/ | MYSANSCRATCH=/ | ||
| MYLOCALSCRATCH=/ | MYLOCALSCRATCH=/ | ||
| Line 172: | Line 177: | ||
| cp -rp ~/ | cp -rp ~/ | ||
| - | # start the application and remeber | + | # start the application and remember |
| + | # save some stuff for checking later and restart | ||
| cr_run ./ | cr_run ./ | ||
| process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk ' | process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk ' | ||
| pwd > pwd.$process_id | pwd > pwd.$process_id | ||
| + | cp -p pwd* *.shell *.out *.err ~/blcr/ | ||
| # on restart, give cr_restart some time to set up | # on restart, give cr_restart some time to set up | ||
| Line 191: | Line 198: | ||
| # checkpoint time interval, make it very large (small for testing) | # checkpoint time interval, make it very large (small for testing) | ||
| sleep 120 | sleep 120 | ||
| - | # save the checkpoint file outside of /sanscratch | + | # save the checkpoint file outside of sanscratch |
| cr_checkpoint -f ~/ | cr_checkpoint -f ~/ | ||
| + | cp -p context ~/blcr/ | ||
| # if the application has crashed, exit | # if the application has crashed, exit | ||
| process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk ' | process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk ' | ||
| if [ " | if [ " | ||
| - | # save some stuff for checking later | ||
| - | cp -p pwd* *.shell *.out *.err context ~/blcr/ | ||
| rm -f `cat ~/ | rm -f `cat ~/ | ||
| exit; | exit; | ||
| fi | fi | ||
| done | done | ||
| + | |||
| + | |||
| </ | </ | ||
cluster/124.txt · Last modified: 2016/03/11 15:14 by hmeij07
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