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cluster:124 [DokuWiki]

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cluster:124 [2013/10/31 15:18]
hmeij
cluster:124 [2016/03/03 13:58]
hmeij07
Line 1: Line 1:
 \\ \\
 **[[cluster:0|Back]]** **[[cluster:0|Back]]**
 +
 +Queue ''tinymem'' supports BLCR
 + --- //[[hmeij@wesleyan.edu|Henk]] 2016/03/03 13:57//
 +
 +Adjust your PATH and LD_LIBRARY_PATH accordingly.
  
 ==== BLCR ==== ==== BLCR ====
Line 163: Line 168:
 export LD_LIBRARY_PATH=/share/apps/blcr/0.8.5/mw256/lib:$LD_LIBRARY_PATH export LD_LIBRARY_PATH=/share/apps/blcr/0.8.5/mw256/lib:$LD_LIBRARY_PATH
  
-# checkpoint directory is /sanscratch/JOBPID+# checkpoint file is defined in while loop
 MYSANSCRATCH=/sanscratch/$LSB_JOBID MYSANSCRATCH=/sanscratch/$LSB_JOBID
 MYLOCALSCRATCH=/localscratch/$LSB_JOBID MYLOCALSCRATCH=/localscratch/$LSB_JOBID
Line 177: Line 182:
 process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk '{print $1}'` process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk '{print $1}'`
 pwd > pwd.$process_id pwd > pwd.$process_id
-cp -p pwd* *.shell *.out *.err context ~/blcr/+cp -p pwd* *.shell *.out *.err ~/blcr/
  
 # on restart, give cr_restart some time to set up # on restart, give cr_restart some time to set up
Line 195: Line 200:
         # save the checkpoint file outside of sanscratch         # save the checkpoint file outside of sanscratch
         cr_checkpoint -f ~/blcr/checkpoint.$process_id $process_id         cr_checkpoint -f ~/blcr/checkpoint.$process_id $process_id
 +        cp -p context ~/blcr/
         # if the application has crashed, exit         # if the application has crashed, exit
         process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk '{print $1}'`         process_id=`ps -u hmeij | grep t-20001030-01 | grep -v grep | awk '{print $1}'`
cluster/124.txt ยท Last modified: 2016/03/11 15:14 by hmeij07