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--- cluster:164 [2017/11/16 12:41]
hmeij07 [PPMA Bench]
+++ cluster:164 [2017/11/17 12:28]
hmeij07 [FSL]
@@ Line 668: / Line 668: @@
+==== FreeSurfer ====
+  * http://freesurfer.net/fswiki/DownloadAndInstall#TestyourFreeSurferInstallation
+  * Example using sample-001.mgz
+<code>
+Node n37 (mwgpu cpu run)
+(2013) Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz
+recon-all -s bert finished without error
+example 1 user    0m3.516s
+example 2 user    893m1.761s ~15 hours
+example 3 user    ???m       ~15 hours (estimated)
+Node n78 (amber128 cpu run)
+(2017) Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz
+recon-all -s bert finished without error
+example 1 user    0m2.315s
+example 2 user    488m49.215s ~8 hours
+example 3 user    478m44.622s ~8 hours
+freeview -v \
+    bert/mri/T1.mgz \
+    bert/mri/wm.mgz \
+    bert/mri/brainmask.mgz \
+    bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \
+    -f \
+    bert/surf/lh.white:edgecolor=blue \
+    bert/surf/lh.pial:edgecolor=red \
+    bert/surf/rh.white:edgecolor=blue \
+    bert/surf/rh.pial:edgecolor=red
+</code>
+Development code for the GPU http://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page
 \\
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