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cluster:214 [2022/08/03 09:13]
hmeij07 [Amber22]
cluster:214 [2022/08/03 09:59]
hmeij07 [Amber22]
Line 641: Line 641:
  
 ==== Amber22 ==== ==== Amber22 ====
- 
-First establish a successful run with the **run.rocky** script for Amber20 (listed above). Then change the module in your script. 
- 
-<code> 
- 
-module load amber/22 
- 
-# if the module does not show up in the output of your console 
- 
-module avail 
- 
-# treat your module cache as out of date 
- 
-module --ignore_cache avail 
- 
-</code> 
  
 Amber22 is somehow incompatible with CentOS/Rocky openmpi (yum install). Hence the latest version of openmpi was compiled and installed into $AMBERHOME. No need to set PATHs, just be sure to source amber.sh in your script. (compile instructions below for me...) Amber22 is somehow incompatible with CentOS/Rocky openmpi (yum install). Hence the latest version of openmpi was compiled and installed into $AMBERHOME. No need to set PATHs, just be sure to source amber.sh in your script. (compile instructions below for me...)
Line 671: Line 655:
 /share/apps/CENTOS7/amber/amber22/bin/mpirun /share/apps/CENTOS7/amber/amber22/bin/mpirun
 /share/apps/CENTOS7/amber/amber22/bin/mpicc /share/apps/CENTOS7/amber/amber22/bin/mpicc
 +
 +</code>
 +
 +First establish a successful run with the **run.rocky** script for Amber20 (listed above). Then change the module in your script.
 +
 +<code>
 +
 +module load amber/22
 +
 +# if the module does not show up in the output of your console
 +
 +module avail
 +
 +# treat your module cache as out of date
 +
 +module --ignore_cache avail
  
 </code> </code>
cluster/214.txt ยท Last modified: 2023/08/18 12:19 by hmeij07