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cluster:215 [DokuWiki]

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cluster:215 [2022/04/10 15:27]
hmeij07 [Miniconda3]
cluster:215 [2022/08/03 10:36]
hmeij07 [Amber]
Line 30: Line 30:
     * ''conda list'' will show you what is installed     * ''conda list'' will show you what is installed
  
 +  * **iqtree** rocky8 queues (cottontail2)
 +  * alsao installed in miniconda2&3 for centos queues (cottontail,
 +  * see [[cluster:73|Software]] page)
  
 +<code>
 +module load miniconda3/py39
 +which conda
 +/share/apps/CENTOS8/ohpc/software/miniconda3/py39/bin/conda
 +
 +[hmeij@cottontail2 slurm]$ conda list | grep iqtree
 +iqtree                    2.0.3                h176a8bc_1    bioconda
 +
 +iqtree --version
 +IQ-TREE multicore version 2.0.3 for Linux 64-bit built Dec 20 2020
 +</code>
 ===== Amber ===== ===== Amber =====
 +
 +  * module: amber/22
 +  * Amber22 with AmberTools22
 +  * embedded openmpi 1.4.1
 +    * how to run on centos7 nodes
 +    * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#amber22
  
   * module: amber/20   * module: amber/20
cluster/215.txt ยท Last modified: 2024/03/14 11:00 by hmeij07