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cluster:73 [2022/04/26 20:21] hmeij07 [Paleogenomics Tools] |
cluster:73 [2022/08/03 14:38] hmeij07 [Amber] |
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Using htslib 1.9 | Using htslib 1.9 | ||
Copyright (C) 2018 Genome Research Ltd. | Copyright (C) 2018 Genome Research Ltd. | ||
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+ | </ | ||
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+ | * **iqtree** fcohanlab/ | ||
+ | |||
+ | < | ||
+ | |||
+ | [hmeij@greentail52 ~]$ iqtree --version | ||
+ | IQ-TREE multicore version 2.0.3 for Linux 64-bit built Dec 20 2020 | ||
+ | |||
</ | </ | ||
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cufflinks | cufflinks | ||
samtools | samtools | ||
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+ | # fcohan lab | ||
+ | [hmeij@petaltail ~]$ iqtree --version | ||
+ | IQ-TREE multicore version 2.1.4-beta COVID-edition for Linux 64-bit built Jun 24 2021 | ||
</ | </ | ||
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+ | |||
**Trinity** assembles transcript sequences from Illumina RNA-Seq data. | **Trinity** assembles transcript sequences from Illumina RNA-Seq data. | ||
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====== Amber ====== | ====== Amber ====== | ||
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+ | ** Amber 22 ** | ||
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+ | Details on how to run on CentOS7 can be found at | ||
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+ | * https:// | ||
** Amber 20 ** | ** Amber 20 ** |