cluster:73
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
cluster:73 [2022/06/28 12:12] hmeij07 [Miniconda3] |
cluster:73 [2022/10/18 09:21] hmeij07 [Sequencing Tools #3] |
||
|---|---|---|---|
| Line 223: | Line 223: | ||
| Suite of tools for high-accuracy basecaling, assembly, polishing, and alignment. Installed in a specific miniconda3 environment (see below). | Suite of tools for high-accuracy basecaling, assembly, polishing, and alignment. Installed in a specific miniconda3 environment (see below). | ||
| - | * Requires centos7 so queues mwgpu, amber128, exx96 | + | * Requires centos7 so queues mwgpu, |
| * debug server greentail52 | * debug server greentail52 | ||
| * PREFIX=/ | * PREFIX=/ | ||
| Line 233: | Line 233: | ||
| < | < | ||
| - | # environment | + | # environment |
| source / | source / | ||
| export PATH=/ | export PATH=/ | ||
| Line 244: | Line 244: | ||
| which conda python pip mpirun gcc cmake | which conda python pip mpirun gcc cmake | ||
| python --version | python --version | ||
| + | |||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | |||
| </ | </ | ||
| Line 319: | Line 327: | ||
| ** Flye ** | ** Flye ** | ||
| - | Somewhat annoying, no miniconda3 package, so local install, use minconda3 | + | Somewhat annoying, no miniconda3 package, so local install, use minconda3 |
| + | |||
| + | * v2.9.1 (october 2022) | ||
| + | * python bin/flye | ||
| + | * chnage the PATHs accordingly | ||
| + | |||
| + | < | ||
| + | |||
| + | / | ||
| + | 2.9.1-b1780 | ||
| + | |||
| + | </ | ||
| - | * v2.9 | + | * v2.9 (august 2021) |
| * python bin/flye | * python bin/flye | ||
| Line 3262: | Line 3281: | ||
| ====== Amber ====== | ====== Amber ====== | ||
| + | |||
| + | ** Amber 22 ** | ||
| + | |||
| + | Details on how to run on CentOS7 can be found at | ||
| + | |||
| + | * https:// | ||
| ** Amber 20 ** | ** Amber 20 ** | ||
cluster/73.txt · Last modified: 2024/02/16 11:17 by hmeij07
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
