cluster:73
Differences
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cluster:73 [2022/08/03 10:38] hmeij07 [Amber] |
cluster:73 [2022/10/18 09:21] hmeij07 [Sequencing Tools #3] |
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| Suite of tools for high-accuracy basecaling, assembly, polishing, and alignment. Installed in a specific miniconda3 environment (see below). | Suite of tools for high-accuracy basecaling, assembly, polishing, and alignment. Installed in a specific miniconda3 environment (see below). | ||
| - | * Requires centos7 so queues mwgpu, amber128, exx96 | + | * Requires centos7 so queues mwgpu, |
| * debug server greentail52 | * debug server greentail52 | ||
| * PREFIX=/ | * PREFIX=/ | ||
| Line 233: | Line 233: | ||
| < | < | ||
| - | # environment | + | # environment |
| source / | source / | ||
| export PATH=/ | export PATH=/ | ||
| Line 244: | Line 244: | ||
| which conda python pip mpirun gcc cmake | which conda python pip mpirun gcc cmake | ||
| python --version | python --version | ||
| + | |||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | |||
| </ | </ | ||
| Line 319: | Line 327: | ||
| ** Flye ** | ** Flye ** | ||
| - | Somewhat annoying, no miniconda3 package, so local install, use minconda3 | + | Somewhat annoying, no miniconda3 package, so local install, use minconda3 |
| + | |||
| + | * v2.9.1 (october 2022) | ||
| + | * python bin/flye | ||
| + | * chnage the PATHs accordingly | ||
| + | |||
| + | < | ||
| + | |||
| + | / | ||
| + | 2.9.1-b1780 | ||
| + | |||
| + | </ | ||
| - | * v2.9 | + | * v2.9 (august 2021) |
| * python bin/flye | * python bin/flye | ||
cluster/73.txt · Last modified: 2024/02/16 11:17 by hmeij07
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