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This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm,ent). For gpu applications CUDA 11.6 is the default. That module cuda/11.6
will automatically load for those applications.
The control of the environment is done via environment modules.
Read this page https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#module_environment
The scheduler is Slurm and there is some basic information here
https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm
https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs
module show miniconda3/py39
will show you file to source if functions are neededconda list
will show you what is installedmodule load miniconda3/py39 which conda /share/apps/CENTOS8/ohpc/software/miniconda3/py39/bin/conda [hmeij@cottontail2 slurm]$ conda list | grep iqtree iqtree 2.0.3 h176a8bc_1 bioconda iqtree --version IQ-TREE multicore version 2.0.3 for Linux 64-bit built Dec 20 2020 # https://userguide.mdanalysis.org/stable/installation.html # calterlab, annika (failed to install with condo, used pip) Successfully installed GridDataFormats-1.0.1 MDAnalysis-2.3.0 biopython-1.79 fasteners-0.18 gsd-2.6.1 joblib-1.2.0 mmtf-python-1.1.3 mrcfile-1.4.3 msgpack-1.0.4 networkx-2.8.8 threadpoolctl-3.1.0